Files
2025-01-26 19:24:23 -08:00

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51 KiB
Python

from __future__ import annotations
import typing
import warnings
from packaging.version import Version
from typing import Any, Callable, Dict, Optional
import numpy as np
import pandas as pd
from pandas import Series
from pandas.core.internals import SingleBlockManager
import shapely
from shapely.geometry import GeometryCollection
from shapely.geometry.base import BaseGeometry
import geopandas
from geopandas.base import GeoPandasBase, _delegate_property
from geopandas.explore import _explore_geoseries
from geopandas.plotting import plot_series
from . import _compat as compat
from ._decorator import doc
from .array import (
GeometryDtype,
from_shapely,
from_wkb,
from_wkt,
points_from_xy,
to_wkb,
to_wkt,
)
from .base import is_geometry_type
if typing.TYPE_CHECKING:
import os
def _geoseries_constructor_with_fallback(
data=None, index=None, crs: Optional[Any] = None, **kwargs
):
"""
A flexible constructor for GeoSeries._constructor, which needs to be able
to fall back to a Series (if a certain operation does not produce
geometries)
"""
try:
return GeoSeries(data=data, index=index, crs=crs, **kwargs)
except TypeError:
return Series(data=data, index=index, **kwargs)
def _expanddim_logic(df):
"""Shared logic for _constructor_expanddim and _constructor_from_mgr_expanddim."""
from geopandas import GeoDataFrame
if (df.dtypes == "geometry").sum() > 0:
if df.shape[1] == 1:
geo_col_name = df.columns[0]
else:
geo_col_name = None
if geo_col_name is None or not is_geometry_type(df[geo_col_name]):
df = GeoDataFrame(df)
df._geometry_column_name = None
else:
df = df.set_geometry(geo_col_name)
return df
def _geoseries_expanddim(data=None, *args, **kwargs):
# pd.Series._constructor_expanddim == pd.DataFrame, we start
# with that then specialize.
df = pd.DataFrame(data, *args, **kwargs)
return _expanddim_logic(df)
class GeoSeries(GeoPandasBase, Series):
"""
A Series object designed to store shapely geometry objects.
Parameters
----------
data : array-like, dict, scalar value
The geometries to store in the GeoSeries.
index : array-like or Index
The index for the GeoSeries.
crs : value (optional)
Coordinate Reference System of the geometry objects. Can be anything accepted by
:meth:`pyproj.CRS.from_user_input() <pyproj.crs.CRS.from_user_input>`,
such as an authority string (eg "EPSG:4326") or a WKT string.
kwargs
Additional arguments passed to the Series constructor,
e.g. ``name``.
Examples
--------
>>> from shapely.geometry import Point
>>> s = geopandas.GeoSeries([Point(1, 1), Point(2, 2), Point(3, 3)])
>>> s
0 POINT (1 1)
1 POINT (2 2)
2 POINT (3 3)
dtype: geometry
>>> s = geopandas.GeoSeries(
... [Point(1, 1), Point(2, 2), Point(3, 3)], crs="EPSG:3857"
... )
>>> s.crs # doctest: +SKIP
<Projected CRS: EPSG:3857>
Name: WGS 84 / Pseudo-Mercator
Axis Info [cartesian]:
- X[east]: Easting (metre)
- Y[north]: Northing (metre)
Area of Use:
- name: World - 85°S to 85°N
- bounds: (-180.0, -85.06, 180.0, 85.06)
Coordinate Operation:
- name: Popular Visualisation Pseudo-Mercator
- method: Popular Visualisation Pseudo Mercator
Datum: World Geodetic System 1984
- Ellipsoid: WGS 84
- Prime Meridian: Greenwich
>>> s = geopandas.GeoSeries(
... [Point(1, 1), Point(2, 2), Point(3, 3)], index=["a", "b", "c"], crs=4326
... )
>>> s
a POINT (1 1)
b POINT (2 2)
c POINT (3 3)
dtype: geometry
>>> s.crs
<Geographic 2D CRS: EPSG:4326>
Name: WGS 84
Axis Info [ellipsoidal]:
- Lat[north]: Geodetic latitude (degree)
- Lon[east]: Geodetic longitude (degree)
Area of Use:
- name: World.
- bounds: (-180.0, -90.0, 180.0, 90.0)
Datum: World Geodetic System 1984 ensemble
- Ellipsoid: WGS 84
- Prime Meridian: Greenwich
See Also
--------
GeoDataFrame
pandas.Series
"""
def __init__(self, data=None, index=None, crs: Optional[Any] = None, **kwargs):
if (
hasattr(data, "crs")
or (isinstance(data, pd.Series) and hasattr(data.array, "crs"))
) and crs:
data_crs = data.crs if hasattr(data, "crs") else data.array.crs
if not data_crs:
# make a copy to avoid setting CRS to passed GeometryArray
data = data.copy()
else:
if not data.crs == crs:
raise ValueError(
"CRS mismatch between CRS of the passed geometries "
"and 'crs'. Use 'GeoSeries.set_crs(crs, "
"allow_override=True)' to overwrite CRS or "
"'GeoSeries.to_crs(crs)' to reproject geometries. "
)
if isinstance(data, SingleBlockManager):
if not isinstance(data.blocks[0].dtype, GeometryDtype):
raise TypeError(
"Non geometry data passed to GeoSeries constructor, "
f"received data of dtype '{data.blocks[0].dtype}'"
)
if isinstance(data, BaseGeometry):
# fix problem for scalar geometries passed, ensure the list of
# scalars is of correct length if index is specified
n = len(index) if index is not None else 1
data = [data] * n
name = kwargs.pop("name", None)
if not is_geometry_type(data):
# if data is None and dtype is specified (eg from empty overlay
# test), specifying dtype raises an error:
# https://github.com/pandas-dev/pandas/issues/26469
kwargs.pop("dtype", None)
# Use Series constructor to handle input data
with warnings.catch_warnings():
# suppress additional warning from pandas for empty data
# (will always give object dtype instead of float dtype in the future,
# making the `if s.empty: s = s.astype(object)` below unnecessary)
empty_msg = "The default dtype for empty Series"
warnings.filterwarnings("ignore", empty_msg, DeprecationWarning)
warnings.filterwarnings("ignore", empty_msg, FutureWarning)
s = pd.Series(data, index=index, name=name, **kwargs)
# prevent trying to convert non-geometry objects
if s.dtype != object:
if (s.empty and s.dtype == "float64") or data is None:
# pd.Series with empty data gives float64 for older pandas versions
s = s.astype(object)
else:
raise TypeError(
"Non geometry data passed to GeoSeries constructor, "
f"received data of dtype '{s.dtype}'"
)
# extract object-dtype numpy array from pandas Series; with CoW this
# gives a read-only array, so we try to set the flag back to writeable
data = s.to_numpy()
try:
data.flags.writeable = True
except ValueError:
pass
# try to convert to GeometryArray
try:
data = from_shapely(data, crs)
except TypeError:
raise TypeError(
"Non geometry data passed to GeoSeries constructor, "
f"received data of dtype '{s.dtype}'"
)
index = s.index
name = s.name
super().__init__(data, index=index, name=name, **kwargs)
if not self.crs:
self.crs = crs
def append(self, *args, **kwargs) -> GeoSeries:
return self._wrapped_pandas_method("append", *args, **kwargs)
@GeoPandasBase.crs.setter
def crs(self, value):
if self.crs is not None:
warnings.warn(
"Overriding the CRS of a GeoSeries that already has CRS. "
"This unsafe behavior will be deprecated in future versions. "
"Use GeoSeries.set_crs method instead.",
stacklevel=2,
category=DeprecationWarning,
)
self.geometry.values.crs = value
@property
def geometry(self) -> GeoSeries:
return self
@property
def x(self) -> Series:
"""Return the x location of point geometries in a GeoSeries
Returns
-------
pandas.Series
Examples
--------
>>> from shapely.geometry import Point
>>> s = geopandas.GeoSeries([Point(1, 1), Point(2, 2), Point(3, 3)])
>>> s.x
0 1.0
1 2.0
2 3.0
dtype: float64
See Also
--------
GeoSeries.y
GeoSeries.z
"""
return _delegate_property("x", self)
@property
def y(self) -> Series:
"""Return the y location of point geometries in a GeoSeries
Returns
-------
pandas.Series
Examples
--------
>>> from shapely.geometry import Point
>>> s = geopandas.GeoSeries([Point(1, 1), Point(2, 2), Point(3, 3)])
>>> s.y
0 1.0
1 2.0
2 3.0
dtype: float64
See Also
--------
GeoSeries.x
GeoSeries.z
"""
return _delegate_property("y", self)
@property
def z(self) -> Series:
"""Return the z location of point geometries in a GeoSeries
Returns
-------
pandas.Series
Examples
--------
>>> from shapely.geometry import Point
>>> s = geopandas.GeoSeries([Point(1, 1, 1), Point(2, 2, 2), Point(3, 3, 3)])
>>> s.z
0 1.0
1 2.0
2 3.0
dtype: float64
See Also
--------
GeoSeries.x
GeoSeries.y
"""
return _delegate_property("z", self)
@classmethod
def from_file(cls, filename: os.PathLike | typing.IO, **kwargs) -> GeoSeries:
"""Alternate constructor to create a ``GeoSeries`` from a file.
Can load a ``GeoSeries`` from a file from any format recognized by
`pyogrio`. See http://pyogrio.readthedocs.io/ for details.
From a file with attributes loads only geometry column. Note that to do
that, GeoPandas first loads the whole GeoDataFrame.
Parameters
----------
filename : str
File path or file handle to read from. Depending on which kwargs
are included, the content of filename may vary. See
:func:`pyogrio.read_dataframe` for usage details.
kwargs : key-word arguments
These arguments are passed to :func:`pyogrio.read_dataframe`, and can be
used to access multi-layer data, data stored within archives (zip files),
etc.
Examples
--------
>>> import geodatasets
>>> path = geodatasets.get_path('nybb')
>>> s = geopandas.GeoSeries.from_file(path)
>>> s
0 MULTIPOLYGON (((970217.022 145643.332, 970227....
1 MULTIPOLYGON (((1029606.077 156073.814, 102957...
2 MULTIPOLYGON (((1021176.479 151374.797, 102100...
3 MULTIPOLYGON (((981219.056 188655.316, 980940....
4 MULTIPOLYGON (((1012821.806 229228.265, 101278...
Name: geometry, dtype: geometry
See Also
--------
read_file : read file to GeoDataFrame
"""
from geopandas import GeoDataFrame
df = GeoDataFrame.from_file(filename, **kwargs)
return GeoSeries(df.geometry, crs=df.crs)
@classmethod
def from_wkb(
cls, data, index=None, crs: Optional[Any] = None, on_invalid="raise", **kwargs
) -> GeoSeries:
"""
Alternate constructor to create a ``GeoSeries``
from a list or array of WKB objects
Parameters
----------
data : array-like or Series
Series, list or array of WKB objects
index : array-like or Index
The index for the GeoSeries.
crs : value, optional
Coordinate Reference System of the geometry objects. Can be anything
accepted by
:meth:`pyproj.CRS.from_user_input() <pyproj.crs.CRS.from_user_input>`,
such as an authority string (eg "EPSG:4326") or a WKT string.
on_invalid: {"raise", "warn", "ignore"}, default "raise"
- raise: an exception will be raised if a WKB input geometry is invalid.
- warn: a warning will be raised and invalid WKB geometries will be returned
as None.
- ignore: invalid WKB geometries will be returned as None without a warning.
kwargs
Additional arguments passed to the Series constructor,
e.g. ``name``.
Returns
-------
GeoSeries
See Also
--------
GeoSeries.from_wkt
"""
return cls._from_wkb_or_wkt(
from_wkb, data, index=index, crs=crs, on_invalid=on_invalid, **kwargs
)
@classmethod
def from_wkt(
cls, data, index=None, crs: Optional[Any] = None, on_invalid="raise", **kwargs
) -> GeoSeries:
"""
Alternate constructor to create a ``GeoSeries``
from a list or array of WKT objects
Parameters
----------
data : array-like, Series
Series, list, or array of WKT objects
index : array-like or Index
The index for the GeoSeries.
crs : value, optional
Coordinate Reference System of the geometry objects. Can be anything
accepted by
:meth:`pyproj.CRS.from_user_input() <pyproj.crs.CRS.from_user_input>`,
such as an authority string (eg "EPSG:4326") or a WKT string.
on_invalid : {"raise", "warn", "ignore"}, default "raise"
- raise: an exception will be raised if a WKT input geometry is invalid.
- warn: a warning will be raised and invalid WKT geometries will be
returned as ``None``.
- ignore: invalid WKT geometries will be returned as ``None`` without a
warning.
kwargs
Additional arguments passed to the Series constructor,
e.g. ``name``.
Returns
-------
GeoSeries
See Also
--------
GeoSeries.from_wkb
Examples
--------
>>> wkts = [
... 'POINT (1 1)',
... 'POINT (2 2)',
... 'POINT (3 3)',
... ]
>>> s = geopandas.GeoSeries.from_wkt(wkts)
>>> s
0 POINT (1 1)
1 POINT (2 2)
2 POINT (3 3)
dtype: geometry
"""
return cls._from_wkb_or_wkt(
from_wkt, data, index=index, crs=crs, on_invalid=on_invalid, **kwargs
)
@classmethod
def from_xy(cls, x, y, z=None, index=None, crs=None, **kwargs) -> GeoSeries:
"""
Alternate constructor to create a :class:`~geopandas.GeoSeries` of Point
geometries from lists or arrays of x, y(, z) coordinates
In case of geographic coordinates, it is assumed that longitude is captured
by ``x`` coordinates and latitude by ``y``.
Parameters
----------
x, y, z : iterable
index : array-like or Index, optional
The index for the GeoSeries. If not given and all coordinate inputs
are Series with an equal index, that index is used.
crs : value, optional
Coordinate Reference System of the geometry objects. Can be anything
accepted by
:meth:`pyproj.CRS.from_user_input() <pyproj.crs.CRS.from_user_input>`,
such as an authority string (eg "EPSG:4326") or a WKT string.
**kwargs
Additional arguments passed to the Series constructor,
e.g. ``name``.
Returns
-------
GeoSeries
See Also
--------
GeoSeries.from_wkt
points_from_xy
Examples
--------
>>> x = [2.5, 5, -3.0]
>>> y = [0.5, 1, 1.5]
>>> s = geopandas.GeoSeries.from_xy(x, y, crs="EPSG:4326")
>>> s
0 POINT (2.5 0.5)
1 POINT (5 1)
2 POINT (-3 1.5)
dtype: geometry
"""
if index is None:
if (
isinstance(x, Series)
and isinstance(y, Series)
and x.index.equals(y.index)
and (z is None or (isinstance(z, Series) and x.index.equals(z.index)))
): # check if we can reuse index
index = x.index
return cls(points_from_xy(x, y, z, crs=crs), index=index, crs=crs, **kwargs)
@classmethod
def _from_wkb_or_wkt(
cls,
from_wkb_or_wkt_function: Callable,
data,
index=None,
crs: Optional[Any] = None,
on_invalid: str = "raise",
**kwargs,
) -> GeoSeries:
"""Create a GeoSeries from either WKT or WKB values"""
if isinstance(data, Series):
if index is not None:
data = data.reindex(index)
else:
index = data.index
data = data.values
return cls(
from_wkb_or_wkt_function(data, crs=crs, on_invalid=on_invalid),
index=index,
**kwargs,
)
@classmethod
def from_arrow(cls, arr, **kwargs) -> GeoSeries:
"""
Construct a GeoSeries from a Arrow array object with a GeoArrow
extension type.
See https://geoarrow.org/ for details on the GeoArrow specification.
This functions accepts any Arrow array object implementing
the `Arrow PyCapsule Protocol`_ (i.e. having an ``__arrow_c_array__``
method).
.. _Arrow PyCapsule Protocol: https://arrow.apache.org/docs/format/CDataInterface/PyCapsuleInterface.html
.. versionadded:: 1.0
Parameters
----------
arr : pyarrow.Array, Arrow array
Any array object implementing the Arrow PyCapsule Protocol
(i.e. has an ``__arrow_c_array__`` or ``__arrow_c_stream__``
method). The type of the array should be one of the
geoarrow geometry types.
**kwargs
Other parameters passed to the GeoSeries constructor.
Returns
-------
GeoSeries
"""
from geopandas.io._geoarrow import arrow_to_geometry_array
return cls(arrow_to_geometry_array(arr), **kwargs)
@property
def __geo_interface__(self) -> Dict:
"""Returns a ``GeoSeries`` as a python feature collection.
Implements the `geo_interface`. The returned python data structure
represents the ``GeoSeries`` as a GeoJSON-like ``FeatureCollection``.
Note that the features will have an empty ``properties`` dict as they
don't have associated attributes (geometry only).
Examples
--------
>>> from shapely.geometry import Point
>>> s = geopandas.GeoSeries([Point(1, 1), Point(2, 2), Point(3, 3)])
>>> s.__geo_interface__
{'type': 'FeatureCollection', 'features': [{'id': '0', 'type': 'Feature', \
'properties': {}, 'geometry': {'type': 'Point', 'coordinates': (1.0, 1.0)}, \
'bbox': (1.0, 1.0, 1.0, 1.0)}, {'id': '1', 'type': 'Feature', \
'properties': {}, 'geometry': {'type': 'Point', 'coordinates': (2.0, 2.0)}, \
'bbox': (2.0, 2.0, 2.0, 2.0)}, {'id': '2', 'type': 'Feature', 'properties': \
{}, 'geometry': {'type': 'Point', 'coordinates': (3.0, 3.0)}, 'bbox': (3.0, \
3.0, 3.0, 3.0)}], 'bbox': (1.0, 1.0, 3.0, 3.0)}
"""
from geopandas import GeoDataFrame
return GeoDataFrame({"geometry": self}).__geo_interface__
def to_file(
self,
filename: os.PathLike | typing.IO,
driver: Optional[str] = None,
index: Optional[bool] = None,
**kwargs,
):
"""Write the ``GeoSeries`` to a file.
By default, an ESRI shapefile is written, but any OGR data source
supported by Pyogrio or Fiona can be written.
Parameters
----------
filename : string
File path or file handle to write to. The path may specify a
GDAL VSI scheme.
driver : string, default None
The OGR format driver used to write the vector file.
If not specified, it attempts to infer it from the file extension.
If no extension is specified, it saves ESRI Shapefile to a folder.
index : bool, default None
If True, write index into one or more columns (for MultiIndex).
Default None writes the index into one or more columns only if
the index is named, is a MultiIndex, or has a non-integer data
type. If False, no index is written.
.. versionadded:: 0.7
Previously the index was not written.
mode : string, default 'w'
The write mode, 'w' to overwrite the existing file and 'a' to append.
Not all drivers support appending. The drivers that support appending
are listed in fiona.supported_drivers or
https://github.com/Toblerity/Fiona/blob/master/fiona/drvsupport.py
crs : pyproj.CRS, default None
If specified, the CRS is passed to Fiona to
better control how the file is written. If None, GeoPandas
will determine the crs based on crs df attribute.
The value can be anything accepted
by :meth:`pyproj.CRS.from_user_input() <pyproj.crs.CRS.from_user_input>`,
such as an authority string (eg "EPSG:4326") or a WKT string. The keyword
is not supported for the "pyogrio" engine.
engine : str, "pyogrio" or "fiona"
The underlying library that is used to write the file. Currently, the
supported options are "pyogrio" and "fiona". Defaults to "pyogrio" if
installed, otherwise tries "fiona".
**kwargs :
Keyword args to be passed to the engine, and can be used to write
to multi-layer data, store data within archives (zip files), etc.
In case of the "pyogrio" engine, the keyword arguments are passed to
`pyogrio.write_dataframe`. In case of the "fiona" engine, the keyword
arguments are passed to fiona.open`. For more information on possible
keywords, type: ``import pyogrio; help(pyogrio.write_dataframe)``.
See Also
--------
GeoDataFrame.to_file : write GeoDataFrame to file
read_file : read file to GeoDataFrame
Examples
--------
>>> s.to_file('series.shp') # doctest: +SKIP
>>> s.to_file('series.gpkg', driver='GPKG', layer='name1') # doctest: +SKIP
>>> s.to_file('series.geojson', driver='GeoJSON') # doctest: +SKIP
"""
from geopandas import GeoDataFrame
data = GeoDataFrame({"geometry": self}, index=self.index)
data.to_file(filename, driver, index=index, **kwargs)
#
# Implement pandas methods
#
@property
def _constructor(self):
return _geoseries_constructor_with_fallback
def _constructor_from_mgr(self, mgr, axes):
assert isinstance(mgr, SingleBlockManager)
if not isinstance(mgr.blocks[0].dtype, GeometryDtype):
return Series._from_mgr(mgr, axes)
return GeoSeries._from_mgr(mgr, axes)
@property
def _constructor_expanddim(self):
return _geoseries_expanddim
def _constructor_expanddim_from_mgr(self, mgr, axes):
df = pd.DataFrame._from_mgr(mgr, axes)
return _expanddim_logic(df)
def _wrapped_pandas_method(self, mtd, *args, **kwargs):
"""Wrap a generic pandas method to ensure it returns a GeoSeries"""
val = getattr(super(), mtd)(*args, **kwargs)
if type(val) == Series:
val.__class__ = GeoSeries
val.crs = self.crs
return val
def __getitem__(self, key):
return self._wrapped_pandas_method("__getitem__", key)
@doc(pd.Series)
def sort_index(self, *args, **kwargs):
return self._wrapped_pandas_method("sort_index", *args, **kwargs)
@doc(pd.Series)
def take(self, *args, **kwargs):
return self._wrapped_pandas_method("take", *args, **kwargs)
@doc(pd.Series)
def select(self, *args, **kwargs):
return self._wrapped_pandas_method("select", *args, **kwargs)
@doc(pd.Series)
def apply(self, func, convert_dtype: Optional[bool] = None, args=(), **kwargs):
if convert_dtype is not None:
kwargs["convert_dtype"] = convert_dtype
else:
# if compat.PANDAS_GE_21 don't pass through, use pandas default
# of true to avoid internally triggering the pandas warning
if not compat.PANDAS_GE_21:
kwargs["convert_dtype"] = True
# to avoid warning
result = super().apply(func, args=args, **kwargs)
if isinstance(result, GeoSeries):
if self.crs is not None:
result.set_crs(self.crs, inplace=True)
return result
def isna(self) -> Series:
"""
Detect missing values.
Historically, NA values in a GeoSeries could be represented by
empty geometric objects, in addition to standard representations
such as None and np.nan. This behaviour is changed in version 0.6.0,
and now only actual missing values return True. To detect empty
geometries, use ``GeoSeries.is_empty`` instead.
Returns
-------
A boolean pandas Series of the same size as the GeoSeries,
True where a value is NA.
Examples
--------
>>> from shapely.geometry import Polygon
>>> s = geopandas.GeoSeries(
... [Polygon([(0, 0), (1, 1), (0, 1)]), None, Polygon([])]
... )
>>> s
0 POLYGON ((0 0, 1 1, 0 1, 0 0))
1 None
2 POLYGON EMPTY
dtype: geometry
>>> s.isna()
0 False
1 True
2 False
dtype: bool
See Also
--------
GeoSeries.notna : inverse of isna
GeoSeries.is_empty : detect empty geometries
"""
return super().isna()
def isnull(self) -> Series:
"""Alias for `isna` method. See `isna` for more detail."""
return self.isna()
def notna(self) -> Series:
"""
Detect non-missing values.
Historically, NA values in a GeoSeries could be represented by
empty geometric objects, in addition to standard representations
such as None and np.nan. This behaviour is changed in version 0.6.0,
and now only actual missing values return False. To detect empty
geometries, use ``~GeoSeries.is_empty`` instead.
Returns
-------
A boolean pandas Series of the same size as the GeoSeries,
False where a value is NA.
Examples
--------
>>> from shapely.geometry import Polygon
>>> s = geopandas.GeoSeries(
... [Polygon([(0, 0), (1, 1), (0, 1)]), None, Polygon([])]
... )
>>> s
0 POLYGON ((0 0, 1 1, 0 1, 0 0))
1 None
2 POLYGON EMPTY
dtype: geometry
>>> s.notna()
0 True
1 False
2 True
dtype: bool
See Also
--------
GeoSeries.isna : inverse of notna
GeoSeries.is_empty : detect empty geometries
"""
if self.is_empty.any():
warnings.warn(
"GeoSeries.notna() previously returned False for both missing (None) "
"and empty geometries. Now, it only returns False for missing values. "
"Since the calling GeoSeries contains empty geometries, the result "
"has changed compared to previous versions of GeoPandas.\n"
"Given a GeoSeries 's', you can use '~s.is_empty & s.notna()' to get "
"back the old behaviour.\n\n"
"To further ignore this warning, you can do: \n"
"import warnings; warnings.filterwarnings('ignore', "
"'GeoSeries.notna', UserWarning)",
UserWarning,
stacklevel=2,
)
return super().notna()
def notnull(self) -> Series:
"""Alias for `notna` method. See `notna` for more detail."""
return self.notna()
def fillna(self, value=None, inplace: bool = False, limit=None, **kwargs):
"""
Fill NA values with geometry (or geometries).
Parameters
----------
value : shapely geometry or GeoSeries, default None
If None is passed, NA values will be filled with GEOMETRYCOLLECTION EMPTY.
If a shapely geometry object is passed, it will be
used to fill all missing values. If a ``GeoSeries`` or ``GeometryArray``
are passed, missing values will be filled based on the corresponding index
locations. If pd.NA or np.nan are passed, values will be filled with
``None`` (not GEOMETRYCOLLECTION EMPTY).
limit : int, default None
This is the maximum number of entries along the entire axis
where NaNs will be filled. Must be greater than 0 if not None.
Returns
-------
GeoSeries
Examples
--------
>>> from shapely.geometry import Polygon
>>> s = geopandas.GeoSeries(
... [
... Polygon([(0, 0), (1, 1), (0, 1)]),
... None,
... Polygon([(0, 0), (-1, 1), (0, -1)]),
... ]
... )
>>> s
0 POLYGON ((0 0, 1 1, 0 1, 0 0))
1 None
2 POLYGON ((0 0, -1 1, 0 -1, 0 0))
dtype: geometry
Filled with an empty polygon.
>>> s.fillna()
0 POLYGON ((0 0, 1 1, 0 1, 0 0))
1 GEOMETRYCOLLECTION EMPTY
2 POLYGON ((0 0, -1 1, 0 -1, 0 0))
dtype: geometry
Filled with a specific polygon.
>>> s.fillna(Polygon([(0, 1), (2, 1), (1, 2)]))
0 POLYGON ((0 0, 1 1, 0 1, 0 0))
1 POLYGON ((0 1, 2 1, 1 2, 0 1))
2 POLYGON ((0 0, -1 1, 0 -1, 0 0))
dtype: geometry
Filled with another GeoSeries.
>>> from shapely.geometry import Point
>>> s_fill = geopandas.GeoSeries(
... [
... Point(0, 0),
... Point(1, 1),
... Point(2, 2),
... ]
... )
>>> s.fillna(s_fill)
0 POLYGON ((0 0, 1 1, 0 1, 0 0))
1 POINT (1 1)
2 POLYGON ((0 0, -1 1, 0 -1, 0 0))
dtype: geometry
See Also
--------
GeoSeries.isna : detect missing values
"""
if value is None:
value = GeometryCollection()
return super().fillna(value=value, limit=limit, inplace=inplace, **kwargs)
def __contains__(self, other) -> bool:
"""Allow tests of the form "geom in s"
Tests whether a GeoSeries contains a geometry.
Note: This is not the same as the geometric method "contains".
"""
if isinstance(other, BaseGeometry):
return np.any(self.geom_equals(other))
else:
return False
@doc(plot_series)
def plot(self, *args, **kwargs):
return plot_series(self, *args, **kwargs)
@doc(_explore_geoseries)
def explore(self, *args, **kwargs):
"""Interactive map based on folium/leaflet.js"""
return _explore_geoseries(self, *args, **kwargs)
def explode(self, ignore_index=False, index_parts=False) -> GeoSeries:
"""
Explode multi-part geometries into multiple single geometries.
Single rows can become multiple rows.
This is analogous to PostGIS's ST_Dump(). The 'path' index is the
second level of the returned MultiIndex
Parameters
----------
ignore_index : bool, default False
If True, the resulting index will be labelled 0, 1, …, n - 1,
ignoring `index_parts`.
index_parts : boolean, default False
If True, the resulting index will be a multi-index (original
index with an additional level indicating the multiple
geometries: a new zero-based index for each single part geometry
per multi-part geometry).
Returns
-------
A GeoSeries with a MultiIndex. The levels of the MultiIndex are the
original index and a zero-based integer index that counts the
number of single geometries within a multi-part geometry.
Examples
--------
>>> from shapely.geometry import MultiPoint
>>> s = geopandas.GeoSeries(
... [MultiPoint([(0, 0), (1, 1)]), MultiPoint([(2, 2), (3, 3), (4, 4)])]
... )
>>> s
0 MULTIPOINT ((0 0), (1 1))
1 MULTIPOINT ((2 2), (3 3), (4 4))
dtype: geometry
>>> s.explode(index_parts=True)
0 0 POINT (0 0)
1 POINT (1 1)
1 0 POINT (2 2)
1 POINT (3 3)
2 POINT (4 4)
dtype: geometry
See also
--------
GeoDataFrame.explode
"""
from .base import _get_index_for_parts
geometries, outer_idx = shapely.get_parts(self.values._data, return_index=True)
index = _get_index_for_parts(
self.index,
outer_idx,
ignore_index=ignore_index,
index_parts=index_parts,
)
return GeoSeries(geometries, index=index, crs=self.crs).__finalize__(self)
#
# Additional methods
#
@compat.requires_pyproj
def set_crs(
self,
crs: Optional[Any] = None,
epsg: Optional[int] = None,
inplace: bool = False,
allow_override: bool = False,
):
"""
Set the Coordinate Reference System (CRS) of a ``GeoSeries``.
Pass ``None`` to remove CRS from the ``GeoSeries``.
Notes
-----
The underlying geometries are not transformed to this CRS. To
transform the geometries to a new CRS, use the ``to_crs`` method.
Parameters
----------
crs : pyproj.CRS | None, optional
The value can be anything accepted
by :meth:`pyproj.CRS.from_user_input() <pyproj.crs.CRS.from_user_input>`,
such as an authority string (eg "EPSG:4326") or a WKT string.
epsg : int, optional if `crs` is specified
EPSG code specifying the projection.
inplace : bool, default False
If True, the CRS of the GeoSeries will be changed in place
(while still returning the result) instead of making a copy of
the GeoSeries.
allow_override : bool, default False
If the the GeoSeries already has a CRS, allow to replace the
existing CRS, even when both are not equal.
Returns
-------
GeoSeries
Examples
--------
>>> from shapely.geometry import Point
>>> s = geopandas.GeoSeries([Point(1, 1), Point(2, 2), Point(3, 3)])
>>> s
0 POINT (1 1)
1 POINT (2 2)
2 POINT (3 3)
dtype: geometry
Setting CRS to a GeoSeries without one:
>>> s.crs is None
True
>>> s = s.set_crs('epsg:3857')
>>> s.crs # doctest: +SKIP
<Projected CRS: EPSG:3857>
Name: WGS 84 / Pseudo-Mercator
Axis Info [cartesian]:
- X[east]: Easting (metre)
- Y[north]: Northing (metre)
Area of Use:
- name: World - 85°S to 85°N
- bounds: (-180.0, -85.06, 180.0, 85.06)
Coordinate Operation:
- name: Popular Visualisation Pseudo-Mercator
- method: Popular Visualisation Pseudo Mercator
Datum: World Geodetic System 1984
- Ellipsoid: WGS 84
- Prime Meridian: Greenwich
Overriding existing CRS:
>>> s = s.set_crs(4326, allow_override=True)
Without ``allow_override=True``, ``set_crs`` returns an error if you try to
override CRS.
See Also
--------
GeoSeries.to_crs : re-project to another CRS
"""
from pyproj import CRS
if crs is not None:
crs = CRS.from_user_input(crs)
elif epsg is not None:
crs = CRS.from_epsg(epsg)
if not allow_override and self.crs is not None and not self.crs == crs:
raise ValueError(
"The GeoSeries already has a CRS which is not equal to the passed "
"CRS. Specify 'allow_override=True' to allow replacing the existing "
"CRS without doing any transformation. If you actually want to "
"transform the geometries, use 'GeoSeries.to_crs' instead."
)
if not inplace:
result = self.copy()
else:
result = self
result.array.crs = crs
return result
def to_crs(
self, crs: Optional[Any] = None, epsg: Optional[int] = None
) -> GeoSeries:
"""Returns a ``GeoSeries`` with all geometries transformed to a new
coordinate reference system.
Transform all geometries in a GeoSeries to a different coordinate
reference system. The ``crs`` attribute on the current GeoSeries must
be set. Either ``crs`` or ``epsg`` may be specified for output.
This method will transform all points in all objects. It has no notion
of projecting entire geometries. All segments joining points are
assumed to be lines in the current projection, not geodesics. Objects
crossing the dateline (or other projection boundary) will have
undesirable behavior.
Parameters
----------
crs : pyproj.CRS, optional if `epsg` is specified
The value can be anything accepted
by :meth:`pyproj.CRS.from_user_input() <pyproj.crs.CRS.from_user_input>`,
such as an authority string (eg "EPSG:4326") or a WKT string.
epsg : int, optional if `crs` is specified
EPSG code specifying output projection.
Returns
-------
GeoSeries
Examples
--------
>>> from shapely.geometry import Point
>>> s = geopandas.GeoSeries([Point(1, 1), Point(2, 2), Point(3, 3)], crs=4326)
>>> s
0 POINT (1 1)
1 POINT (2 2)
2 POINT (3 3)
dtype: geometry
>>> s.crs # doctest: +SKIP
<Geographic 2D CRS: EPSG:4326>
Name: WGS 84
Axis Info [ellipsoidal]:
- Lat[north]: Geodetic latitude (degree)
- Lon[east]: Geodetic longitude (degree)
Area of Use:
- name: World
- bounds: (-180.0, -90.0, 180.0, 90.0)
Datum: World Geodetic System 1984
- Ellipsoid: WGS 84
- Prime Meridian: Greenwich
>>> s = s.to_crs(3857)
>>> s
0 POINT (111319.491 111325.143)
1 POINT (222638.982 222684.209)
2 POINT (333958.472 334111.171)
dtype: geometry
>>> s.crs # doctest: +SKIP
<Projected CRS: EPSG:3857>
Name: WGS 84 / Pseudo-Mercator
Axis Info [cartesian]:
- X[east]: Easting (metre)
- Y[north]: Northing (metre)
Area of Use:
- name: World - 85°S to 85°N
- bounds: (-180.0, -85.06, 180.0, 85.06)
Coordinate Operation:
- name: Popular Visualisation Pseudo-Mercator
- method: Popular Visualisation Pseudo Mercator
Datum: World Geodetic System 1984
- Ellipsoid: WGS 84
- Prime Meridian: Greenwich
See Also
--------
GeoSeries.set_crs : assign CRS
"""
return GeoSeries(
self.values.to_crs(crs=crs, epsg=epsg), index=self.index, name=self.name
)
def estimate_utm_crs(self, datum_name: str = "WGS 84"):
"""Returns the estimated UTM CRS based on the bounds of the dataset.
.. versionadded:: 0.9
Parameters
----------
datum_name : str, optional
The name of the datum to use in the query. Default is WGS 84.
Returns
-------
pyproj.CRS
Examples
--------
>>> import geodatasets
>>> df = geopandas.read_file(
... geodatasets.get_path("geoda.chicago_health")
... )
>>> df.geometry.estimate_utm_crs() # doctest: +SKIP
<Derived Projected CRS: EPSG:32616>
Name: WGS 84 / UTM zone 16N
Axis Info [cartesian]:
- E[east]: Easting (metre)
- N[north]: Northing (metre)
Area of Use:
- name: Between 90°W and 84°W, northern hemisphere between equator and 84°N, ...
- bounds: (-90.0, 0.0, -84.0, 84.0)
Coordinate Operation:
- name: UTM zone 16N
- method: Transverse Mercator
Datum: World Geodetic System 1984 ensemble
- Ellipsoid: WGS 84
- Prime Meridian: Greenwich
"""
return self.values.estimate_utm_crs(datum_name)
def to_json(
self,
show_bbox: bool = True,
drop_id: bool = False,
to_wgs84: bool = False,
**kwargs,
) -> str:
"""
Returns a GeoJSON string representation of the GeoSeries.
Parameters
----------
show_bbox : bool, optional, default: True
Include bbox (bounds) in the geojson
drop_id : bool, default: False
Whether to retain the index of the GeoSeries as the id property
in the generated GeoJSON. Default is False, but may want True
if the index is just arbitrary row numbers.
to_wgs84: bool, optional, default: False
If the CRS is set on the active geometry column it is exported as
WGS84 (EPSG:4326) to meet the `2016 GeoJSON specification
<https://tools.ietf.org/html/rfc7946>`_.
Set to True to force re-projection and set to False to ignore CRS. False by
default.
*kwargs* that will be passed to json.dumps().
Returns
-------
JSON string
Examples
--------
>>> from shapely.geometry import Point
>>> s = geopandas.GeoSeries([Point(1, 1), Point(2, 2), Point(3, 3)])
>>> s
0 POINT (1 1)
1 POINT (2 2)
2 POINT (3 3)
dtype: geometry
>>> s.to_json()
'{"type": "FeatureCollection", "features": [{"id": "0", "type": "Feature", "pr\
operties": {}, "geometry": {"type": "Point", "coordinates": [1.0, 1.0]}, "bbox": [1.0,\
1.0, 1.0, 1.0]}, {"id": "1", "type": "Feature", "properties": {}, "geometry": {"type"\
: "Point", "coordinates": [2.0, 2.0]}, "bbox": [2.0, 2.0, 2.0, 2.0]}, {"id": "2", "typ\
e": "Feature", "properties": {}, "geometry": {"type": "Point", "coordinates": [3.0, 3.\
0]}, "bbox": [3.0, 3.0, 3.0, 3.0]}], "bbox": [1.0, 1.0, 3.0, 3.0]}'
See Also
--------
GeoSeries.to_file : write GeoSeries to file
"""
return self.to_frame("geometry").to_json(
na="null", show_bbox=show_bbox, drop_id=drop_id, to_wgs84=to_wgs84, **kwargs
)
def to_wkb(self, hex: bool = False, **kwargs) -> Series:
"""
Convert GeoSeries geometries to WKB
Parameters
----------
hex : bool
If true, export the WKB as a hexadecimal string.
The default is to return a binary bytes object.
kwargs
Additional keyword args will be passed to
:func:`shapely.to_wkb`.
Returns
-------
Series
WKB representations of the geometries
See also
--------
GeoSeries.to_wkt
"""
return Series(to_wkb(self.array, hex=hex, **kwargs), index=self.index)
def to_wkt(self, **kwargs) -> Series:
"""
Convert GeoSeries geometries to WKT
Parameters
----------
kwargs
Keyword args will be passed to :func:`shapely.to_wkt`.
Returns
-------
Series
WKT representations of the geometries
Examples
--------
>>> from shapely.geometry import Point
>>> s = geopandas.GeoSeries([Point(1, 1), Point(2, 2), Point(3, 3)])
>>> s
0 POINT (1 1)
1 POINT (2 2)
2 POINT (3 3)
dtype: geometry
>>> s.to_wkt()
0 POINT (1 1)
1 POINT (2 2)
2 POINT (3 3)
dtype: object
See also
--------
GeoSeries.to_wkb
"""
return Series(to_wkt(self.array, **kwargs), index=self.index)
def to_arrow(self, geometry_encoding="WKB", interleaved=True, include_z=None):
"""Encode a GeoSeries to GeoArrow format.
See https://geoarrow.org/ for details on the GeoArrow specification.
This functions returns a generic Arrow array object implementing
the `Arrow PyCapsule Protocol`_ (i.e. having an ``__arrow_c_array__``
method). This object can then be consumed by your Arrow implementation
of choice that supports this protocol.
.. _Arrow PyCapsule Protocol: https://arrow.apache.org/docs/format/CDataInterface/PyCapsuleInterface.html
.. versionadded:: 1.0
Parameters
----------
geometry_encoding : {'WKB', 'geoarrow' }, default 'WKB'
The GeoArrow encoding to use for the data conversion.
interleaved : bool, default True
Only relevant for 'geoarrow' encoding. If True, the geometries'
coordinates are interleaved in a single fixed size list array.
If False, the coordinates are stored as separate arrays in a
struct type.
include_z : bool, default None
Only relevant for 'geoarrow' encoding (for WKB, the dimensionality
of the individial geometries is preserved).
If False, return 2D geometries. If True, include the third dimension
in the output (if a geometry has no third dimension, the z-coordinates
will be NaN). By default, will infer the dimensionality from the
input geometries. Note that this inference can be unreliable with
empty geometries (for a guaranteed result, it is recommended to
specify the keyword).
Returns
-------
GeoArrowArray
A generic Arrow array object with geometry data encoded to GeoArrow.
Examples
--------
>>> from shapely.geometry import Point
>>> gser = geopandas.GeoSeries([Point(1, 2), Point(2, 1)])
>>> gser
0 POINT (1 2)
1 POINT (2 1)
dtype: geometry
>>> arrow_array = gser.to_arrow()
>>> arrow_array
<geopandas.io._geoarrow.GeoArrowArray object at ...>
The returned array object needs to be consumed by a library implementing
the Arrow PyCapsule Protocol. For example, wrapping the data as a
pyarrow.Array (requires pyarrow >= 14.0):
>>> import pyarrow as pa
>>> array = pa.array(arrow_array)
>>> array
<pyarrow.lib.BinaryArray object at ...>
[
0101000000000000000000F03F0000000000000040,
01010000000000000000000040000000000000F03F
]
"""
import pyarrow as pa
from geopandas.io._geoarrow import (
GeoArrowArray,
construct_geometry_array,
construct_wkb_array,
)
field_name = self.name if self.name is not None else ""
if geometry_encoding.lower() == "geoarrow":
if Version(pa.__version__) < Version("10.0.0"):
raise ValueError("Converting to 'geoarrow' requires pyarrow >= 10.0.")
field, geom_arr = construct_geometry_array(
np.array(self.array),
include_z=include_z,
field_name=field_name,
crs=self.crs,
interleaved=interleaved,
)
elif geometry_encoding.lower() == "wkb":
field, geom_arr = construct_wkb_array(
np.asarray(self.array), field_name=field_name, crs=self.crs
)
else:
raise ValueError(
"Expected geometry encoding 'WKB' or 'geoarrow' "
f"got {geometry_encoding}"
)
return GeoArrowArray(field, geom_arr)
def clip(self, mask, keep_geom_type: bool = False, sort=False) -> GeoSeries:
"""Clip points, lines, or polygon geometries to the mask extent.
Both layers must be in the same Coordinate Reference System (CRS).
The GeoSeries will be clipped to the full extent of the `mask` object.
If there are multiple polygons in mask, data from the GeoSeries will be
clipped to the total boundary of all polygons in mask.
Parameters
----------
mask : GeoDataFrame, GeoSeries, (Multi)Polygon, list-like
Polygon vector layer used to clip `gdf`.
The mask's geometry is dissolved into one geometric feature
and intersected with GeoSeries.
If the mask is list-like with four elements ``(minx, miny, maxx, maxy)``,
``clip`` will use a faster rectangle clipping
(:meth:`~GeoSeries.clip_by_rect`), possibly leading to slightly different
results.
keep_geom_type : boolean, default False
If True, return only geometries of original type in case of intersection
resulting in multiple geometry types or GeometryCollections.
If False, return all resulting geometries (potentially mixed-types).
sort : boolean, default False
If True, the order of rows in the clipped GeoSeries will be preserved
at small performance cost.
If False the order of rows in the clipped GeoSeries will be random.
Returns
-------
GeoSeries
Vector data (points, lines, polygons) from `gdf` clipped to
polygon boundary from mask.
See also
--------
clip : top-level function for clip
Examples
--------
Clip points (grocery stores) with polygons (the Near West Side community):
>>> import geodatasets
>>> chicago = geopandas.read_file(
... geodatasets.get_path("geoda.chicago_health")
... )
>>> near_west_side = chicago[chicago["community"] == "NEAR WEST SIDE"]
>>> groceries = geopandas.read_file(
... geodatasets.get_path("geoda.groceries")
... ).to_crs(chicago.crs)
>>> groceries.shape
(148, 8)
>>> nws_groceries = groceries.geometry.clip(near_west_side)
>>> nws_groceries.shape
(7,)
"""
return geopandas.clip(self, mask=mask, keep_geom_type=keep_geom_type, sort=sort)